By Maki Shiraki, Daniel Leussink and Lisa Barrington TOKYO (Reuters) -Japanese authorities said on Wednesday a passenger jet that collided with a Coast Guard turboprop at a Tokyo airport had been given permission to land, but the smaller plane had not been cleared for take-off, based on control tower transcripts. All 379 people aboard the Japan Airlines (JAL) Airbus A350 managed to evacuate after it erupted in flames following Tuesday’s crash with a De Havilland Dash-8 Coast Guard turboprop shortly after landing at Haneda airport. But five died among the six Coast Guard crew who were due to de…